PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 345aa    MW: 37411.8 Da    PI: 6.7704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909936.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-06119141426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C  f++tG C +Gd C  aHg
  XP_010909936.1 119 AACTEFRKTGRCERGDACDLAHG 141
                     78****************88887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0046115142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.822116143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4121142IPR000571Zinc finger, CCCH-type
SMARTSM0035625151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAFGEGNHHH PTVQVPPWTM FDDPTAGMQV SFPVSGVTGE AVLAALQRFL PSNNEPLDDS  60
DEPLDSALDA FSCDEFRMYE FKVRRCPRGR SHDWTECPYA HPGEKARRRD PRRFHYSGAA  120
CTEFRKTGRC ERGDACDLAH GVFESWLHPT RYRTQFCKDG TACRRRVCFF AHTPNQLRVL  180
PQSPRSPTQP APESYDGSPA RRSKNLISSP RSTLISPSVS PTSESPPVSP VGEQAMNEVL  240
TAIRNLQLSK AKSVPCSWRV GMVGGGGFGS PRGVGAFRAG FASLPATPTA AGGGGLVWAE  300
EETEKDGRGT RFEVLGEEEA VEGCSDAGGG SAAVPDLGWI SELVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909936.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotO821993e-94C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A067KPP41e-117A0A067KPP4_JATCU; Uncharacterized protein
STRINGGLYMA07G15240.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-84C3H family protein